RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-EiwyFTMv-hDm6Xk73CW1Q	snoU109	Small nucleolar RNA U109 [Source:RFAM;Acc:RF01233]	snoRNA	9606	7:107603363-107603507	110
UG_GRCh38-ejlttX0zLERcXGB2KCxtg	UQCC3, C11orf83, UNQ655	ubiquinol-cytochrome c reductase complex assembly factor 3 [Source:HGNC Symbol;Acc:HGNC:34399]	protein_coding	9606	11:62670273-62673687	141
UG_GRCh38-EK3Hypet6_KFPQG3S-sdg	TMEM56, FLJ31842, RP11-57H12.1	transmembrane protein 56 [Source:HGNC Symbol;Acc:HGNC:26477]	protein_coding	9606	1:95117338-95197607	143
UG_GRCh38-Ek_QeKyRnRgds_G-e8PDw	ADNP2, KIAA0863, ZNF508	ADNP homeobox 2 [Source:HGNC Symbol;Acc:HGNC:23803]	protein_coding	9606	18:80109031-80147523	143
UG_GRCh38-EL7CzIsKiaizDQzjO-0Mg	PRRX2, PMX2, PRX2	paired related homeobox 2 [Source:HGNC Symbol;Acc:HGNC:21338]	protein_coding	9606	9:129665641-129722674	119
UG_GRCh38-ENDF9teLVG9ZK66AoMKpg	RP11-392P7.1	None	processed_pseudogene	9606	12:12850982-12851740	124
UG_GRCh38-EqmniaH16eJzqYS7Co1_w	GTPBP6, cU136G2.2, FLJ20977, PGPL	GTP binding protein 6 (putative) [Source:HGNC Symbol;Acc:HGNC:30189]	protein_coding	9606	X:304529-318819	142
UG_GRCh38-EqYXyPv8Wb2z7_Xq-bRIQ	PRSS38, MPN2, RP11-402H23.1	protease, serine, 38 [Source:HGNC Symbol;Acc:HGNC:29625]	protein_coding	9606	1:227815693-227846470	19
UG_GRCh38-eRNZlAf9Ntoj6djSFGyWg	OLA1P3	Obg-like ATPase 1 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:45278]	processed_pseudogene	9606	12:55870048-55872602	35
UG_GRCh38-EsC6TVsO1Kskm9g9B6OoQ	RP11-386M24.9	None	antisense	9606	15:92602910-92620015	57
UG_GRCh38-ESt0aO1wxDr0fylNZxdvA	EFNA3, Ehk1-L, EPLG3, LERK3	ephrin-A3 [Source:HGNC Symbol;Acc:HGNC:3223]	protein_coding	9606	1:155078872-155087538	136
UG_GRCh38-ETip-1WN4oK312Mn-vPiw	DCDC2B, RP4-622L5.8	doublecortin domain containing 2B [Source:HGNC Symbol;Acc:HGNC:32576]	protein_coding	9606	1:32209094-32216196	133
UG_GRCh38-eX2ln_8hAdb--Ni7lYRGw	PLAUR, CD87, UPAR, URKR	plasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:HGNC:9053]	protein_coding	9606	19:43646095-43670547	143
UG_GRCh38-EY1UMxByhilB3o6AiI0mA	C1QTNF9B-AS1, PCOTH	C1QTNF9B antisense RNA 1 [Source:EntrezGene;Acc:542767]	protein_coding	9606	13:24321126-24321428	0
UG_GRCh38-eYmVaLGiKeGdAbDoYik_w	SNORD116-4, HBII-85-4	small nucleolar RNA, C/D box 116-4 [Source:HGNC Symbol;Acc:HGNC:33070]	snoRNA	9606	15:25059538-25059633	24
UG_GRCh38-EZfr6AXMqINYDPBfMbloA	RNU2-57P	RNA, U2 small nuclear 57, pseudogene [Source:HGNC Symbol;Acc:HGNC:48550]	snRNA	9606	Y:5019076-5019266	1
UG_GRCh38-F037F6CCmmQ-wKvA-_iiA	RP11-138C9.1	None	antisense	9606	17:47682417-47682683	0
UG_GRCh38-f0AZOTVLDiATw2SUkinYw	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	17:50696644-50696760	32
UG_GRCh38-f1RLFz7s3df9_V2ChZQ_w	SPIRE1, KIAA1135, spir-1	spire-type actin nucleation factor 1 [Source:HGNC Symbol;Acc:HGNC:30622]	protein_coding	9606	18:12446512-12658134	142
UG_GRCh38-f5KosF1TiX0345Rj7D8HA	ANKRD36B, AC092683.1, FLJ21281, KIAA1641	ankyrin repeat domain 36B [Source:HGNC Symbol;Acc:HGNC:29333]	protein_coding	9606	2:97492663-97589965	122
UG_GRCh38-F5mI8h75T84QuhASd7iiA	OR8S21P	olfactory receptor, family 8, subfamily S, member 21 pseudogene [Source:HGNC Symbol;Acc:HGNC:31317]	unprocessed_pseudogene	9606	12:48417150-48417337	7
UG_GRCh38-f6dKUukYsWxB_LoloSzvA	MIR5589, hsa-mir-5589	microRNA 5589 [Source:HGNC Symbol;Acc:HGNC:43514]	miRNA	9606	19:10038354-10038413	0
UG_GRCh38-f74nDk31uA7ngvPrt5fYw	AC112518.3	None	lincRNA	9606	4:73710302-73714527	10
UG_GRCh38-F7rGZiikrdll9lTi-o6MA	AC011330.13	None	sense_intronic	9606	15:43642389-43643023	85
UG_GRCh38-F7SxZAK0OVtk14dY-6lXQ	AC055758.1	None	miRNA	9606	3:145897286-145897374	0

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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