RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-FS7Ak9qMOXxgoOwhlfCfg	TRAJ34	T cell receptor alpha joining 34 [Source:HGNC Symbol;Acc:HGNC:12064]	TR_J_gene	9606	14:22507666-22507723	16
UG_GRCh38-fSUcQoiXnqp63FJpMknjQ	RP11-717A5.1	None	processed_pseudogene	9606	2:85360798-85360925	34
UG_GRCh38-fT6xQ97Fwe9ZvPBTR7D2A	RP11-670N15.1	None	antisense	9606	11:21260061-21262570	13
UG_GRCh38-Fu8UXoBHMbjUF9EUFmg8g	RHOT1P1, RHOT1P, RHOT3	ras homolog family member T1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:23777]	processed_pseudogene	9606	18:14222008-14222331	94
UG_GRCh38-FuWlYrDBbFE2Qn4dzMZpg	OR5K2	olfactory receptor, family 5, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:14774]	protein_coding	9606	3:98497604-98498663	56
UG_GRCh38-FWB_DX4SZdQyTpFmGY8vA	TRIM41, MGC1127, RINCK	tripartite motif containing 41 [Source:HGNC Symbol;Acc:HGNC:19013]	protein_coding	9606	5:181222499-181235809	143
UG_GRCh38-fxcvlborUlYOxhh_jk0Bg	PRKRIRP5, bA716O23.3	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:39569]	transcribed_processed_pseudogene	9606	6:11514192-11516466	19
UG_GRCh38-Fxid-Ue7Xlt5MfV97Fg7g	RP4-737E23.5	None	TEC	9606	20:23148086-23149939	39
UG_GRCh38-fxuvwIaQzQGOlwN4Ut5sw	PNPT1P1	polyribonucleotide nucleotidyltransferase 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:44468]	processed_pseudogene	9606	3:3981981-3984295	90
UG_GRCh38-fytZHRw9ddkSK3z0wbXfg	SNORA76	Small nucleolar RNA SNORA76 [Source:RFAM;Acc:RF00598]	snoRNA	9606	5:69160808-69160939	0
UG_GRCh38-G1119SBWHr9qyrodEiL0w	HIST2H4A, H4/n, H4F2, H4FN, HIST2H4	histone cluster 2, H4a [Source:HGNC Symbol;Acc:HGNC:4794]	protein_coding	9606	1:149832659-149839767	88
UG_GRCh38-G6MKfT_mfKzsc49yosDYQ	RNU6-20P, RNU6-20	RNA, U6 small nuclear 20, pseudogene [Source:HGNC Symbol;Acc:HGNC:34264]	snRNA	9606	16:57830536-57830642	27
UG_GRCh38-gbs-xMabP7fePt1CMo0qw	USP9YP19	ubiquitin specific peptidase 9, Y-linked pseudogene 19 [Source:HGNC Symbol;Acc:HGNC:38755]	unprocessed_pseudogene	9606	Y:25748596-25750206	0
UG_GRCh38-GBW9BZPCZADz9Wx7qzupw	CTA-109P11.1, Em:AC005871.1	None	lincRNA	9606	10:117562084-117572457	36
UG_GRCh38-Gc6CEq8FKnfD5H1cozYQQ	SCARNA6	Small Cajal body specific RNA 6 [Source:RFAM;Acc:RF00478]	scaRNA	9606	16:21587627-21587864	9
UG_GRCh38-gDEiLlsSF7ntm5xhSIkVg	CYP4F25P, CYP4F-se1[6:8]	cytochrome P450, family 4, subfamily F, polypeptide 25, pseudogene [Source:HGNC Symbol;Acc:HGNC:39949]	unprocessed_pseudogene	9606	9:64465463-64466498	35
UG_GRCh38-ge2c8wg60EbRDJHe3rVhg	RP11-506F3.1	None	lincRNA	9606	2:109758799-109760364	40
UG_GRCh38-geIRaF1LYTglw_JWgnemA	FTX_5	FTX transcript, XIST regulator conserved region 5 [Source:RFAM;Acc:RF02122]	misc_RNA	9606	X:74293357-74293574	0
UG_GRCh38-gFMTjzVZNlBCj83kHS8DA	PRC1-AS1	PRC1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48587]	antisense	9606	15:90966345-90988624	122
UG_GRCh38-GhrkL72RAesLpNGHsD69Q	RP11-70D24.4	None	lincRNA	9606	16:79619469-79620110	42
UG_GRCh38-GK-mY7IKap5StJaRYg4GQ	BPIFC, BPIL2, dJ149A16.7	BPI fold containing family C [Source:HGNC Symbol;Acc:HGNC:16503]	protein_coding	9606	22:32413847-32464484	73
UG_GRCh38-gK3MtZ8xMC30vEjqGvK3A	CTB-55O6.8	Uncharacterized protein LOC113230 [Source:UniProtKB/Swiss-Prot;Acc:Q96FF7]	protein_coding	9606	19:14072536-14075062	144
UG_GRCh38-gk9X6UkT3r5oJEiFlInAg	RP11-1166P10.6	None	transcribed_processed_pseudogene	9606	16:32008438-32084785	6
UG_GRCh38-gkXN-SqNG9ccvSo7MIMRg	RP11-269F20.1	None	antisense	9606	1:243545532-243548329	106
UG_GRCh38-Go1SHR5NOjTBDEsTd88iA	NASP, DKFZp547F162, FLB7527, FLJ31599, FLJ35510, MGC19722, MGC20372, MGC2297, PRO1999	nuclear autoantigenic sperm protein (histone-binding) [Source:HGNC Symbol;Acc:HGNC:7644]	protein_coding	9606	1:45583846-45618904	144

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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