RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-2aXNnhupQMAtilYVdRkaQ	EPN2-AS1	EPN2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40849]	antisense	9606	17:19296596-19306261	97
UG_GRCh38-2BfN2A2oOGJ7w1Q3GLhRw	PPA1, IOPPP, PP, PP1, Ppase, SID6-8061	pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:HGNC:9226]	protein_coding	9606	10:70202830-70233911	144
UG_GRCh38-2BpiIVGiijqcN3Xx8HJzA	RP11-64K7.1	None	processed_pseudogene	9606	3:132175402-132176711	89
UG_GRCh38-2c1YnAODs9WGK4NCNVqag	RP11-1072C15.1	None	processed_pseudogene	9606	17:44719760-44720597	63
UG_GRCh38-2DoKAVaDfQt2a9nRWfvEw	RAB28P2, bA211N8.5	RAB28, member RAS oncogene family pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:50381]	processed_pseudogene	9606	9:62606797-62607748	1
UG_GRCh38-2H6VW48Iy2q9WBmU-7tVw	C11orf98, C11orf48	chromosome 11 open reading frame 98 [Source:HGNC Symbol;Acc:HGNC:51238]	protein_coding	9606	11:62662816-62665217	78
UG_GRCh38-2JZ8pcDL6jj3dOPr9ik3A	AC005522.6	None	processed_pseudogene	9606	7:76361768-76362113	18
UG_GRCh38-2n2A487-H0SBn2Hpo7v0g	RP11-426J5.3	None	TEC	9606	18:48564795-48568342	112
UG_GRCh38-2Q_Shbv-y_mQCAVdvxvfw	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	19:12088245-12088346	23
UG_GRCh38-2TawADEzRvhS1LCzmcOMA	RP11-70L8.5	None	TEC	9606	9:21892188-21893857	95
UG_GRCh38-2Vsdv7vxgp2pARiJhvI-A	SLC25A52, MCART2	solute carrier family 25, member 52 [Source:HGNC Symbol;Acc:HGNC:23324]	protein_coding	9606	18:31759562-31760880	67
UG_GRCh38-2WG4ncAIZXRIuYCcwtJ6g	KIRREL3-AS3, FLJ40224, NCRNA00288, PRR10	KIRREL3 antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:26855]	antisense	9606	11:127002910-127006058	22
UG_GRCh38-2wQc6vPtzuNSzqLK-P4vQ	AL031768.1	None	miRNA	9606	6:2409536-2409635	31
UG_GRCh38-2XBSzcQCaMMIpaxzVc5Jg	AC021760.1	None	miRNA	9606	8:14514741-14514865	1
UG_GRCh38-341g0ysVR-ua-Loi8b8bQ	AC098650.1	None	miRNA	9606	3:29369337-29369421	18
UG_GRCh38-3ClxQ07e6TrFFYhw7OxCA	BRK1P2, bA319L6.1	BRICK1, SCAR/WAVE actin-nucleating complex subunit pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:42021]	processed_pseudogene	9606	13:91023732-91023954	1
UG_GRCh38-3hBsfIs1QfLB-Br-SRC8A	AC005392.13	None	lincRNA	9606	19:43153279-43160862	24
UG_GRCh38-3LYi4_M3kKLZpCvf7ADvQ	RP11-831H9.11	None	protein_coding	9606	11:62649694-62665178	0
UG_GRCh38-3nVQqvh0_7apxe9mqYRvg	ACLY, ACL, ATPCL, CLATP	ATP citrate lyase [Source:HGNC Symbol;Acc:HGNC:115]	protein_coding	9606	17:41866908-41930542	144
UG_GRCh38-3OP343F9GO8g_TaRn2tjg	TRIM64B	tripartite motif containing 64B [Source:HGNC Symbol;Acc:HGNC:37147]	protein_coding	9606	11:89869282-89876017	8
UG_GRCh38-3pXTr0kO5pfMuPAc3RVnw	GLMP, C1orf85, MGC31963, NCU-G1, RP11-443G18.2	glycosylated lysosomal membrane protein [Source:HGNC Symbol;Acc:HGNC:29436]	protein_coding	9606	1:156290089-156295689	144
UG_GRCh38-3qOO4q7tUxNvZ_kx1pPsQ	RP11-23J9.3, bA23J9.3	None	unprocessed_pseudogene	9606	9:97386240-97396112	22
UG_GRCh38-3Qvqvv87O4Yf2nxwvIhHA	MAGEB10, Em:AC112492.1, FLJ32965	melanoma antigen family B10 [Source:HGNC Symbol;Acc:HGNC:25377]	protein_coding	9606	X:27807990-27823014	17
UG_GRCh38-3qyPNS-BwFt8Nv_nl6hPw	DPRXP2	divergent-paired related homeobox pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:32168]	processed_pseudogene	9606	6:35989515-35990436	35
UG_GRCh38-3xRBxSep251-HoTUqpQBQ	GM2AP1, GM2AP	GM2 ganglioside activator pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:4368]	processed_pseudogene	9606	3:145684572-145685092	3

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Loading