RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-8I4B95uj4hcPcw_pmZgbA	CTD-2006M22.2	None	TEC	9606	3:73624410-73627626	108
UG_GRCh38-8KNjXEpaaGzQRp8ElMIsQ	CTA-345G4.1	None	TEC	9606	16:23962951-23963351	14
UG_GRCh38-8KvUTB8jcRy1-920O6veg	CTD-2369P2.4	None	antisense	9606	19:10259109-10260045	8
UG_GRCh38-8ncWAMFD0vrWOhp_N5X9g	NDUFAF6, C8orf38, MGC40214	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Source:HGNC Symbol;Acc:HGNC:28625]	protein_coding	9606	8:94895767-95116455	142
UG_GRCh38-8qpyKRdr74_bq7SDwoyyg	UBAP1, UBAP	ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:12461]	protein_coding	9606	9:34179005-34252523	142
UG_GRCh38-8SxD1Emif6eg8NoumcPBA	uc_338	TUC338 [Source:RFAM;Acc:RF02271]	misc_RNA	9606	2:175092401-175092587	84
UG_GRCh38-8VRIdHGVSD5S7IV3fBc7A	ZNF738	zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]	protein_coding	9606	19:21358930-21379302	136
UG_GRCh38-8wgUcC8Fw38ZmEE1BXryA	CYP4F32P, CYP4F-se5[6:8]	cytochrome P450, family 4, subfamily F, polypeptide 32, pseudogene [Source:HGNC Symbol;Acc:HGNC:39951]	unprocessed_pseudogene	9606	2:94759259-94760279	65
UG_GRCh38-8xCXHPSjDnChxqVvLVJGA	AC007131.1	None	lincRNA	9606	2:59217708-59279400	23
UG_GRCh38-8XNwhznhwNAgBLsKOh-RA	AP000787.1	None	miRNA	9606	11:95254503-95254621	2
UG_GRCh38-8xpvb4awOC3RSh3qmw-Zg	RP11-121L11.3	None	lincRNA	9606	5:3452816-3461660	6
UG_GRCh38-8YSSPoufd74HjfcL6HJDw	RNU6-1286P	RNA, U6 small nuclear 1286, pseudogene [Source:HGNC Symbol;Acc:HGNC:48249]	snRNA	9606	6:121354354-121354460	3
UG_GRCh38-97Ba663HeBuzXbk89YJ3g	MIR6865, hsa-mir-6865	microRNA 6865 [Source:HGNC Symbol;Acc:HGNC:50182]	miRNA	9606	17:4970086-4970150	33
UG_GRCh38-99GLSfJEY0rOr-J_CAXLA	CTD-2291D10.1	None	lincRNA	9606	19:23046958-23061752	19
UG_GRCh38-9GxQ6iIFI_BTQV-JDLuTA	SNORD56	Small nucleolar RNA SNORD56 [Source:RFAM;Acc:RF00275]	snoRNA	9606	12:115852648-115852718	1
UG_GRCh38-9LeT0YZ0f4ZEpYSCfkRZA	MRPL49P1	mitochondrial ribosomal protein L49 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:29717]	processed_pseudogene	9606	5:64674853-64675387	3
UG_GRCh38-9nD7wbklqzWM15j6qR6XQ	TIPIN, FLJ20516	TIMELESS interacting protein [Source:HGNC Symbol;Acc:HGNC:30750]	protein_coding	9606	15:66336206-66386746	140
UG_GRCh38-9RHHcd0prqGNxeuxkEISQ	TM2D1, BBP, RP11-430G17.2	TM2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24142]	protein_coding	9606	1:61681046-61725423	144
UG_GRCh38-9sqvy8KuuleAWB0lhnQ0g	SNORA26	Small nucleolar RNA SNORA26 [Source:RFAM;Acc:RF00568]	snoRNA	9606	1:212025561-212025682	11
UG_GRCh38-9TEc6APdk493Bg3BiXlNw	CTD-2008P7.6	None	unprocessed_pseudogene	9606	17:28269203-28272365	61
UG_GRCh38-9v8zOL3IfSlgp4oahuODA	RNA5S7, RN5S7	RNA, 5S ribosomal 7 [Source:HGNC Symbol;Acc:HGNC:34368]	rRNA	9606	1:228623667-228623785	0
UG_GRCh38-9wkx_VqXoqo1x7WL0T_ew	RP11-301O19.1	None	antisense	9606	2:86195590-86196049	109
UG_GRCh38-9w_2FczZdogXMSdqDFqPQ	SETP4, dJ30P20.1	SET pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:42923]	processed_pseudogene	9606	X:84755136-84756003	53
UG_GRCh38-9zLSGjeR0Au40jL7OaKMg	POTEM, ACT, P704P, POTE14beta, POTEG	POTE ankyrin domain family, member M [Source:HGNC Symbol;Acc:HGNC:37096]	protein_coding	9606	14:18967434-18999012	5
UG_GRCh38-AapA01HL0ZiI1tGG3QXzA	RP11-718M20.5	None	processed_pseudogene	9606	4:3910283-3910604	2

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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