RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-AAWu7u18Xxye5bV0xlCXA	RP11-321M21.1	None	lincRNA	9606	18:75432703-75436957	9
UG_GRCh38-AGGUgm0byhUIzgDEKsfgA	RP3-382I10.3, dJ382I10.3	None	processed_pseudogene	9606	6:87441165-87442146	51
UG_GRCh38-akeNhEQmnX9Penb5iyBqQ	PTMAP2	prothymosin, alpha pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:9625]	processed_pseudogene	9606	5:118973796-118974122	135
UG_GRCh38-aLc01-qSjBjvSX8W9-_lg	AC084357.1	None	miRNA	9606	12:63824238-63824294	53
UG_GRCh38-AlmTYm53zkNaEC6csUmTw	SEPHS1, bA24J20.4, SPS, SPS1	selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:19685]	protein_coding	9606	10:13317424-13348298	144
UG_GRCh38-ANnrkM52B2Fkpxza9Belg	Metazoa_SRP	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]	misc_RNA	9606	2:47383160-47383421	28
UG_GRCh38-AorkSzPb5JwVZpUpGnyHQ	RP11-20G13.4	None	TEC	9606	15:99497812-99498375	19
UG_GRCh38-AP2xszGEgCPziUgWPtTlg	CTD-2024P10.1	None	antisense	9606	5:34656412-34657250	33
UG_GRCh38-Apu0wUrw1LEitm4po4aFw	RP11-257P3.3	None	antisense	9606	8:81521618-81533275	36
UG_GRCh38-AQdVn6yNOeyFK-lCyLagQ	HAPLN4, BRAL2, KIAA1926	hyaluronan and proteoglycan link protein 4 [Source:HGNC Symbol;Acc:HGNC:31357]	protein_coding	9606	19:19255641-19262796	5
UG_GRCh38-aqMW9g-yyX7qqjTcmgfeg	RP13-492C18.2	None	transcribed_unprocessed_pseudogene	9606	7:56421857-56448375	40
UG_GRCh38-atcYLT_OTCpG1sDavy5Qg	Metazoa_SRP	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]	misc_RNA	9606	2:200460651-200460976	3
UG_GRCh38-aTp6Vdy-Ah1whonVaEDzg	TMC3	transmembrane channel-like 3 [Source:HGNC Symbol;Acc:HGNC:22995]	protein_coding	9606	15:81331217-81374213	114
UG_GRCh38-AtXT17kSYBCP4RyQ5jw7Q	BNIP3P41	BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 41 [Source:HGNC Symbol;Acc:HGNC:49721]	transcribed_processed_pseudogene	9606	4:49096-50124	0
UG_GRCh38-awEIhiHZcZI9NX-02Lw8Q	RP3-399J4.1, dJ399J4.1	None	processed_pseudogene	9606	6:94446740-94447179	5
UG_GRCh38-Awu9mnT9wx0bL-S234Uzg	TM2D2, BLP1	TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]	protein_coding	9606	8:38988808-38996824	142
UG_GRCh38-axdNU95_nimmSYh4JZRgA	RP11-299J3.8	None	antisense	9606	3:122416207-122443180	141
UG_GRCh38-AXyxLNWcZwOP39O_qfo7w	PHLDA1, DT1P1B11, PHRIP, TDAG51	pleckstrin homology-like domain, family A, member 1 [Source:HGNC Symbol;Acc:HGNC:8933]	protein_coding	9606	12:76025447-76033932	143
UG_GRCh38-AYqTUW_RRi7pGQlsofGyA	PGAM1P5	phosphoglycerate mutase 1 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:42452]	transcribed_processed_pseudogene	9606	12:95551582-95673999	122
UG_GRCh38-aZBewxK9qn30R1hejLvew	RNA5SP161, RN5S161	RNA, 5S ribosomal pseudogene 161 [Source:HGNC Symbol;Acc:HGNC:43061]	rRNA	9606	4:56097390-56097504	4
UG_GRCh38-aZp3zhSx-4m71VVGTY_wg	FAM179B, KIAA0423	family with sequence similarity 179, member B [Source:HGNC Symbol;Acc:HGNC:19959]	protein_coding	9606	14:44962208-45074431	144
UG_GRCh38-B-jbiTzsxMLGbia0vN4Vg	RP5-878I13.1, dJ878I13.1	None	processed_pseudogene	9606	X:115424064-115425600	41
UG_GRCh38-b0ibjZ976S6HvMuiAiTpA	SPATA31A7, FAM75A4, FAM75A7, SPATA31A4	SPATA31 subfamily A, member 7 [Source:HGNC Symbol;Acc:HGNC:32007]	protein_coding	9606	9:61190003-61196280	5
UG_GRCh38-B1EJWBZ0NlL92Sj_hvRlw	LGI4	leucine-rich repeat LGI family, member 4 [Source:HGNC Symbol;Acc:HGNC:18712]	protein_coding	9606	19:35124513-35142451	131
UG_GRCh38-b24tMhv0YvUyWpNqZOApg	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	1:62211557-62211666	0

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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