RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-Bxe91n4fEo_VTQmNS0XAA	CTD-2568P8.1	None	lincRNA	9606	14:60323236-60323907	37
UG_GRCh38-BXX8MXgCy5zO0tv5FkFvw	PRSS48, ESSPL	protease, serine, 48 [Source:HGNC Symbol;Acc:HGNC:24635]	protein_coding	9606	4:151277171-151291453	75
UG_GRCh38-bZVUU4Qo1LLP9Rezxtc4Q	NOB1, ART-4, MST158, NOB1P, PSMD8BP1	NIN1/RPN12 binding protein 1 homolog [Source:HGNC Symbol;Acc:HGNC:29540]	protein_coding	9606	16:69741867-69754940	141
UG_GRCh38-C0BCoJyIr0J_kjuF-8Vbw	RP11-950C14.3	None	antisense	9606	14:75004719-75008481	118
UG_GRCh38-c1Yymux2p-YtyWW9WMSvA	AC104532.4	None	antisense	9606	19:5911578-5913899	105
UG_GRCh38-C5wBeyoK5Pg8iAUe6xpeg	RP11-149F8.3	None	processed_pseudogene	9606	9:63719864-63720441	7
UG_GRCh38-c9xLaIZymhHwPkLOl6zkw	AC009948.7	None	processed_pseudogene	9606	2:178454716-178455428	132
UG_GRCh38-ccgN4n1_jkYbSJSQ7tmcg	KLHL24, DRE1, FLJ20059	kelch-like family member 24 [Source:HGNC Symbol;Acc:HGNC:25947]	protein_coding	9606	3:183635568-183684477	143
UG_GRCh38-cCn3nusEDRFBflpGbzgsg	FRG1EP, ABBA01031664.1	FSHD region gene 1 family member E, pseudogene [Source:HGNC Symbol;Acc:HGNC:51764]	unprocessed_pseudogene	9606	20:29480147-29497179	100
UG_GRCh38-cf2uWgLD9zM7ofgRVpJyQ	RP11-12L8.1	None	lincRNA	9606	1:115919350-115931561	51
UG_GRCh38-cFOiP3qojJZnGZWZhwdXQ	RP5-1158E12.1, dJ1158E12.1	None	lincRNA	9606	X:45913267-45917040	7
UG_GRCh38-cI--SnpCoHPS77C-kh3zw	RP11-369C8.1	None	lincRNA	9606	14:45706250-45715952	53
UG_GRCh38-CiItWRN_ohDHWqeEw8zRw	USP39, CGI-21, CGI-21;, HSPC332;, MGC75069, SAD1, SAD1;, SNRNP65	ubiquitin specific peptidase 39 [Source:HGNC Symbol;Acc:HGNC:20071]	protein_coding	9606	2:85602856-85649282	144
UG_GRCh38-cIzpGljEsnnuII3Bgk1xw	MTND2P21	MT-ND2 pseudogene 21 [Source:HGNC Symbol;Acc:HGNC:42122]	unprocessed_pseudogene	9606	2:117025077-117026118	15
UG_GRCh38-cJjpKYpgCCoZhiiDPHzdg	TIMM8BP2, Em:AC002407.1	translocase of inner mitochondrial membrane 8B pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39212]	processed_pseudogene	9606	X:134166682-134166932	51
UG_GRCh38-CLMc34g2Yysg3RLjz-Qrg	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	3:125516979-125517086	32
UG_GRCh38-ClNqdbP2eLoDPh5zoXjrw	PPP1R3D, PPP1R6	protein phosphatase 1, regulatory subunit 3D [Source:HGNC Symbol;Acc:HGNC:9294]	protein_coding	9606	20:59936668-59940297	143
UG_GRCh38-CnI7wBgC32rw7bkoNd1mQ	KLRG2, CLEC15B, FLJ44186	killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:24778]	protein_coding	9606	7:139452690-139483712	119
UG_GRCh38-cPTMuLtFCVU7bYeZ0J5AQ	RPLP1, LP1	ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:HGNC:10372]	protein_coding	9606	15:69452784-69456194	144
UG_GRCh38-cQflAaXO-J3lpmdUkTqxA	RN7SL388P	RNA, 7SL, cytoplasmic 388, pseudogene [Source:HGNC Symbol;Acc:HGNC:46404]	misc_RNA	9606	X:72198712-72199050	61
UG_GRCh38-cR61uH_pWFfV7r-AQ7xVw	EN2	engrailed homeobox 2 [Source:HGNC Symbol;Acc:HGNC:3343]	protein_coding	9606	7:155458129-155464831	101
UG_GRCh38-cRumMVkWrrhQGrN1uuq9A	RP1-72A23.3, dJ72A23.3	None	processed_pseudogene	9606	6:89001548-89001814	47
UG_GRCh38-Cry6T8DDjzMMnmGMRcQtg	MRPL57P6, MRP63P6	mitochondrial ribosomal protein L57 pseudogene 6 [Source:HGNC Symbol;Acc:HGNC:29689]	processed_pseudogene	9606	5:163039291-163039599	3
UG_GRCh38-cUFQmK7qkeLfQg8-vEqAw	AC008173.1	None	processed_pseudogene	9606	2:56750300-56750563	0
UG_GRCh38-CV1E2EkGP-uwrDE_6xRiA	MUC19, FLJ35746	mucin 19, oligomeric [Source:HGNC Symbol;Acc:HGNC:14362]	processed_transcript	9606	12:40393395-40570832	121

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Loading