| Boolean Operators |
|---|
| and | AND |
GO:0001822 AND TAXID:9606 |
Returns accessions existing between two query sets.
|
| or | OR |
BIOTYPE:lincRNA OR BIOTYPE:antisense |
Returns accessions existing in either of two query sets. |
not | NOT
and not | AND NOT |
NOT TAXID:9606
EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex" |
Returns accessions not in the query. |
| () | BIOTYPE:lincRNA AND
(ENRICHED:Heart OR ENRICHED:Kidney) |
Increases the precedence of a query. |
| Expression |
Example |
Description |
| Important! If there is whitespace in your query. The query must be enclosed by quotes. |
| No tag |
ENST00000358073
NONHSAT008273
PAXIP1-AS1
|
Returns matched gene/transcript names, UGAs, or external accessions.
Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids
should return values. Other accession systems may return values if they map to a UGA that also
maps to an Ensembl UGA.
|
| SPECIFIC:(tissue) |
SPECIFIC:"Kidney Cortex" |
Returns sequences detected in only one type of tissue. See [Help] for a list of possible values. |
| ENRICHED:(tissue) |
ENRICHED:Heart |
Returns sequences which have increased expression in the given tissue.
See [Help] for a list of possible values.
|
| EXPRESSED:(tissue) |
EXPRESSED:Heart |
Returns sequences expressed in the given tissue type.
See [Help] for a list of possible values.
|
| METADATA:(metadata) |
METADATA:"Weeks 3" |
Returns sequences from samples with the given metadata.
See [Help] for a list of possible values.
|
| POS:(tax_id):(chromosome):(start)-(end) |
POS:9606:1:914880-969309 |
Returns sequences falling withing the given position. |
| BIOTYPE:(biotype) |
BIOTYPE:lincRNA |
Returns sequences which contain a transcript annotated as the given biotype.
See [Help] for a list of possible values. |
| SEQTYPE:(gene|transcript) |
SEQTYPE:transcript |
Returns the given type of sequence. |
| TAXID:(7955|9606|10090) |
TAXID:7955 |
Returns sequences associated with the given taxonomy.
Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse). |
| GO:(GO term accession) |
GO:0005515 |
Returns sequences which contain an annotation of the given Gene Ontology (GO) term. |
