RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38--1RiYXTPfqmc6I0Jy4LRA	Metazoa_SRP	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]	misc_RNA	9606	2:10691538-10691831	0
UG_GRCh38--7Gua1C6Sl465j5TfXgvA	TRBV7-6, TCRBV6S3A1N1T, TCRBV7S6, TRBV76	T cell receptor beta variable 7-6 [Source:HGNC Symbol;Acc:HGNC:12240]	TR_V_gene	9606	7:142492132-142492673	24
UG_GRCh38--AC4dmCsybKA0cblvW2jQ	IGHV4OR15-8, IGHV4/OR15-8, IGHV4OR158, VSIG6	immunoglobulin heavy variable 4/OR15-8 (non-functional) [Source:HGNC Symbol;Acc:HGNC:5658]	IG_V_gene	9606	15:22184967-22185402	0
UG_GRCh38--aLrux8UaL9lit9npfLcQ	RP11-380F14.2, bA380F14.2	None	antisense	9606	9:84278219-84290131	8
UG_GRCh38--bTOrtSZLkq-qAlYFIAng	RP11-403I13.8	None	processed_transcript	9606	1:145164099-145216058	133
UG_GRCh38--CWqT21VxI-ozDn0ikuxQ	ZNF806	zinc finger protein 806 [Source:HGNC Symbol;Acc:HGNC:33228]	unprocessed_pseudogene	9606	2:132309309-132318736	22
UG_GRCh38--DEDe9L5hwamKpw5mr_NQ	PRR5, FLJ20185k, PP610, Protor-1	proline rich 5 (renal) [Source:HGNC Symbol;Acc:HGNC:31682]	protein_coding	9606	22:44668547-44737681	142
UG_GRCh38--EupuIDaKhRQutQNKYAng	RPS3AP4	ribosomal protein S3A pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:23562]	processed_pseudogene	9606	14:35468272-35469330	27
UG_GRCh38--ffu9Nx4Thx2OwASCxQ9Q	NOL8P1	nucleolar protein 8 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:49557]	processed_pseudogene	9606	4:165547532-165551060	52
UG_GRCh38--FMOtY9hMv8VIF6qnzSTQ	MFI2-AS1	MFI2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40373]	antisense	9606	3:196999460-197004744	137
UG_GRCh38--kVigJ0vebQxlmIA4kLRA	RP11-354M20.3, Em:AC005879.3	None	antisense	9606	10:118017487-118045810	116
UG_GRCh38--L8xt644KFi7DuKp0x6kQ	GS1-388B5.8	None	processed_pseudogene	9606	3:125756086-125756462	2
UG_GRCh38--lGtsjoTo3dI55rXkqLCA	C5orf58	chromosome 5 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:37272]	processed_transcript	9606	5:170232447-170252575	78
UG_GRCh38--N7fc4ie7dbisrMW-q4vQ	LDHC, CT32	lactate dehydrogenase C [Source:HGNC Symbol;Acc:HGNC:6544]	protein_coding	9606	11:18412307-18452058	118
UG_GRCh38--pMIvbozUzJMpu325razA	RP11-498C9.17	None	lincRNA	9606	17:81965632-81966589	25
UG_GRCh38--UO78Nfz-bK_Ty-vnEYPw	RP11-321C24.1, bA321C24.1	None	lincRNA	9606	13:44982077-45083125	17
UG_GRCh38--wleXplZk4Q9LLY9I9dKg	MRPS31P1	mitochondrial ribosomal protein S31 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:29763]	processed_pseudogene	9606	3:41189041-41189236	3
UG_GRCh38-036CgFJSfbEVCHpD7-i4Q	RP11-45A17.3	None	TEC	9606	10:131996738-131999846	111
UG_GRCh38-04YJKWPH9x5rFjey0nq1A	CTC-246B18.10	None	lincRNA	9606	19:39341773-39341945	107
UG_GRCh38-0CLbixCJUz0RQ-wjdo5Hw	NETO1, BCTL1, BTCL1	neuropilin (NRP) and tolloid (TLL)-like 1 [Source:HGNC Symbol;Acc:HGNC:13823]	protein_coding	9606	18:72742314-72868146	58
UG_GRCh38-0DIT0pPPVVb5sXud3KT5Q	CCDC102B, ACY1L, AN, C18orf14, FLJ23594, HsT1731	coiled-coil domain containing 102B [Source:HGNC Symbol;Acc:HGNC:26295]	protein_coding	9606	18:68715209-69055189	141
UG_GRCh38-0KqWYwmFcnt6_tGCdpkWw	RP11-98E6.1	None	processed_pseudogene	9606	12:72431722-72432075	8
UG_GRCh38-0lGyPz8LwOk0Ui_2V6Ujg	SEMA3E, coll-5, KIAA0331, M-SemaK, SEMAH	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]	protein_coding	9606	7:83363906-83649010	128
UG_GRCh38-0MGgYymwnMxKMe1nMlFeA	PTPRD, HPTP, PTPD	protein tyrosine phosphatase, receptor type, D [Source:HGNC Symbol;Acc:HGNC:9668]	protein_coding	9606	9:8314246-10612723	142
UG_GRCh38-0nQTfR5dRvY3D2ZpLm4dA	AC090616.2	None	antisense	9606	17:32141226-32143135	115

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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