RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-FbRZZhJHEk4cUZ11iJQEQ	ABCB7, ABC7, ASAT, Atm1p, EST140535	ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:HGNC Symbol;Acc:HGNC:48]	protein_coding	9606	X:75053172-75156732	142
UG_GRCh38-FCly9uR7s1ww4d_ER4HYQ	RP11-498M14.1	None	processed_pseudogene	9606	1:242882066-242883475	5
UG_GRCh38-FdD7wECiOKtQg3ei8Rmiw	RPRML, MGC43894	reprimo-like [Source:HGNC Symbol;Acc:HGNC:32422]	protein_coding	9606	17:46978156-46979248	90
UG_GRCh38-FdVEt11jb5NAe3-8XiiOg	HECTD2, bA108M11.1, FLJ37306	HECT domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:26736]	protein_coding	9606	10:91409280-91514829	143
UG_GRCh38-fdZRoZQCTvg6qv068Sv0A	ENKD1, C16orf48, DKFZP434A1319	enkurin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25246]	protein_coding	9606	16:67662945-67667265	142
UG_GRCh38-fE-GYALTi59MhhRPqKBFg	SNORD116-7, HBII-85-7	small nucleolar RNA, C/D box 116-7 [Source:HGNC Symbol;Acc:HGNC:33073]	snoRNA	9606	15:25067788-25067882	31
UG_GRCh38-FFhqpwjRkRb346mlxJKog	RP11-666E17.1	None	lincRNA	9606	14:81741002-82030349	8
UG_GRCh38-ffWR-8C-SsTTYsupbw7Eg	RP11-759A24.3	None	lincRNA	9606	15:95990582-96300990	93
UG_GRCh38-FHgCi1lhIdChubuLnC9ag	PSMA2P1	proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:43832]	processed_pseudogene	9606	11:87329407-87330052	54
UG_GRCh38-fiAm92vqSNbKfMF_gdE4Q	RNU6-1195P	RNA, U6 small nuclear 1195, pseudogene [Source:HGNC Symbol;Acc:HGNC:48158]	snRNA	9606	4:41113942-41114045	15
UG_GRCh38-FkO3DB4j4hnGAU5dhBsZQ	RPS3P6	ribosomal protein S3 pseudogene 6 [Source:HGNC Symbol;Acc:HGNC:36061]	processed_pseudogene	9606	12:62021570-62022174	86
UG_GRCh38-FlEg84lR_crNXHe4iXhIw	IFNWP4, bA113D19.3	interferon, omega 1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:5453]	processed_pseudogene	9606	9:21106543-21106836	3
UG_GRCh38-FloasX1BW0tx10G_fZgWQ	BEND6, bA203B9.1, C6orf65, FLJ30162	BEN domain containing 6 [Source:HGNC Symbol;Acc:HGNC:20871]	protein_coding	9606	6:56955126-57027342	131
UG_GRCh38-fMf-K-g-XaGwn4YS1PL5A	RP11-104L21.2	None	sense_intronic	9606	1:167457383-167458661	100
UG_GRCh38-FnBTruTGDwsIJuF_X7mrg	RP11-568K15.1	None	unitary_pseudogene	9606	1:178006136-178037950	130
UG_GRCh38-fOa_Vchq5c09R1cemh8FA	SMPD2, ISC1, nSMase	sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) [Source:HGNC Symbol;Acc:HGNC:11121]	protein_coding	9606	6:109440763-109443919	141
UG_GRCh38-FOcfYp95dSkyT0smiKVjw	MIR553, hsa-mir-553, MIRN553	microRNA 553 [Source:HGNC Symbol;Acc:HGNC:32809]	miRNA	9606	1:100281241-100281308	73
UG_GRCh38-fpNQbdK2l9IGzeihBmyVw	IGHV3-23	immunoglobulin heavy variable 3-23 [Source:HGNC Symbol;Acc:HGNC:5588]	IG_V_gene	9606	14:106268606-106269140	56
UG_GRCh38-FpSZmxPnE25iPKwxFbToA	SLC1A7, EAAT5	solute carrier family 1 (glutamate transporter), member 7 [Source:HGNC Symbol;Acc:HGNC:10945]	protein_coding	9606	1:53087179-53142632	99
UG_GRCh38-FQsi8uQ3ePua5InW8Q0BQ	AC009758.1	None	protein_coding	9606	11:4367351-4368295	0
UG_GRCh38-fQWF6sk-SYT95T2mg0wWA	NPW, PPL8	neuropeptide W [Source:HGNC Symbol;Acc:HGNC:30509]	protein_coding	9606	16:2009926-2020755	121
UG_GRCh38-FR7EWS5pG1vQva8UegHxQ	PKIA-AS1	PKIA antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51659]	lincRNA	9606	8:78426103-78558503	95
UG_GRCh38-frepZQZXgboAWoUwLIv2A	KYNUP2	kynureninase pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39200]	processed_pseudogene	9606	17:19082437-19084834	1
UG_GRCh38-fReSTul6sfOjwL5dA9Ncw	CTB-61M7.1	None	processed_transcript	9606	19:54724496-54798285	5
UG_GRCh38-FrXdW5iih9toT8jZhKSOg	CTA-929C8.6	None	lincRNA	9606	22:27310651-27317456	60

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Loading