RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-gpCSUnS8K2lsRWb8E3pPA	SPANXA2, SPANX	SPANX family, member A2 [Source:HGNC Symbol;Acc:HGNC:14328]	protein_coding	9606	X:141589435-141590772	0
UG_GRCh38-GpRAfqsT4o6NYzCglzjWA	BUD13P1	BUD13 homolog pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:51560]	processed_pseudogene	9606	11:95143637-95145125	67
UG_GRCh38-gqBx9WM4AJZCEjYx0wjxA	CENPO, AC012073.2, CENP-O, MGC11266	centromere protein O [Source:HGNC Symbol;Acc:HGNC:28152]	protein_coding	9606	2:24793136-24822376	142
UG_GRCh38-gQwFAYA6eI7vO9glTr1nA	FP671120.3	None	miRNA	9606	21:8201210-8201287	0
UG_GRCh38-GV39uXNkIfbRnS00McTvw	COCH, COCH-5B2, DFNA31, DFNA9	cochlin [Source:HGNC Symbol;Acc:HGNC:2180]	protein_coding	9606	14:30874514-30895065	141
UG_GRCh38-Gw22T2bn2JpjxKwKJySIA	SAMD8, FLJ25082, SMSr	sterile alpha motif domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26320]	protein_coding	9606	10:75099586-75182123	144
UG_GRCh38-GWSX8ywAMXoiC7Z8Zf7EA	CTC-512J12.4	None	processed_transcript	9606	19:44392439-44448452	0
UG_GRCh38-GwW5_nmEYfcYqayFjc3uA	RP11-588P8.1	None	antisense	9606	4:100190033-100215505	16
UG_GRCh38-GWZt30lhmR6rN7BjPmRwg	ZNF605	zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]	protein_coding	9606	12:132918308-132956306	144
UG_GRCh38-GxeUy6ASfNrRQQEpAKgwg	CTD-2666L21.2	None	processed_pseudogene	9606	19:12284337-12285185	128
UG_GRCh38-Gxt-m3gJktxy8Ao21vreg	RP11-297B17.2, bA297B17.2	None	processed_pseudogene	9606	9:37046835-37047237	18
UG_GRCh38-gy4Za3K490UEn2H8ff15g	RNU6-799P	RNA, U6 small nuclear 799, pseudogene [Source:HGNC Symbol;Acc:HGNC:47762]	snRNA	9606	17:15311345-15311451	10
UG_GRCh38-gYhkmldFz4ztzJcHBadpQ	SNORA51	Small nucleolar RNA SNORA51 [Source:RFAM;Acc:RF00432]	snoRNA	9606	21:40513144-40513279	4
UG_GRCh38-Gyor5FAoj0tg1pTRGSPeA	ARSA	arylsulfatase A [Source:HGNC Symbol;Acc:HGNC:713]	protein_coding	9606	22:50622754-50628173	141
UG_GRCh38-gy_t5bFdqX3a7qpWjsOeg	TMPRSS15, ENTK, MGC133046, PRSS7	transmembrane protease, serine 15 [Source:HGNC Symbol;Acc:HGNC:9490]	protein_coding	9606	21:18269116-18485879	57
UG_GRCh38-h-M_rRJ6zdOkC8wKT1M9w	ACOT13, dJ30M3.1, HT012, THEM2	acyl-CoA thioesterase 13 [Source:HGNC Symbol;Acc:HGNC:20999]	protein_coding	9606	6:24667035-24705065	143
UG_GRCh38-h0P8HZYlaTMCHz-T9cpzw	RP11-692C24.1	None	lincRNA	9606	15:91532891-91535095	21
UG_GRCh38-H1wIDyg0Yt6yTVSPeMmgw	AP000477.3	None	lincRNA	9606	21:24043257-24050286	11
UG_GRCh38-h3mPWu69O82z-CqmRLM7g	AC010096.2	None	lincRNA	9606	2:19475450-19488850	19
UG_GRCh38-h4CK5LsS63tKCVDTDwy3Q	KLK3, APS, PSA	kallikrein-related peptidase 3 [Source:HGNC Symbol;Acc:HGNC:6364]	protein_coding	9606	19:50854915-50860764	73
UG_GRCh38-H4f6zoi5a4Xri_iXJLr7g	CTD-2377D24.2	None	processed_pseudogene	9606	17:48690481-48690624	22
UG_GRCh38-H8x28A1bA17YQhntc6eNA	RPL6P5	ribosomal protein L6 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:36199]	processed_pseudogene	9606	2:145337230-145338057	11
UG_GRCh38-HdeuXuQzpqzVBYYBX9YlQ	RP11-364C11.3	None	sense_intronic	9606	12:119000776-119001842	23
UG_GRCh38-hECJscMd-OhevB8oDeS0Q	RN7SKP265	RNA, 7SK small nuclear pseudogene 265 [Source:HGNC Symbol;Acc:HGNC:45989]	misc_RNA	9606	3:181968459-181968681	4
UG_GRCh38-HEhB0H0fr5JtmoTT3dEUw	CENPCP1, CENPC, CENPC1P1, CENPC2	centromere protein C pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:1855]	processed_pseudogene	9606	12:89500093-89502670	86

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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