RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-i7ozfPqKcf3e5D1_1htfA	RP11-485B17.12	None	processed_pseudogene	9606	X:52531709-52532051	0
UG_GRCh38-i9C9R44OTf4GO59O9_gXQ	CREB3L3, CREB-H	cAMP responsive element binding protein 3-like 3 [Source:HGNC Symbol;Acc:HGNC:18855]	protein_coding	9606	19:4153601-4173054	87
UG_GRCh38-i9glelxgVwwO8IGQ24rZQ	AC097662.2	None	antisense	9606	2:227221052-227325201	144
UG_GRCh38-IaXIukMk7NcdEv73SeJzw	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	15:38542243-38542343	43
UG_GRCh38-idFHs5tZHxZoRuEVJN7PQ	MTND4LP30	MT-ND4L pseudogene 30 [Source:HGNC Symbol;Acc:HGNC:42264]	processed_pseudogene	9606	5:134928030-134928326	97
UG_GRCh38-IduoPLWPiZhIAMJgL8N4g	CTD-3035D6.2	None	lincRNA	9606	14:90822365-90828128	71
UG_GRCh38-Ie9o1J0o9uF_3O-pd41fw	AC002451.3	None	antisense	9606	7:95596682-95613719	92
UG_GRCh38-if_FsQRMcuQV19N5_5-ZA	AL928742.12	None	lincRNA	9606	14:105597691-105600209	6
UG_GRCh38-ihv3wB_OVCU7hU8sCJa4g	CTB-43I4.1	None	TEC	9606	17:51761260-51763397	15
UG_GRCh38-Ih_bTSnSspCIVEJpeb5AA	TMIGD1, TMIGD, UNQ9372	transmembrane and immunoglobulin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32431]	protein_coding	9606	17:30316333-30334059	47
UG_GRCh38-iiGtGNO6kNibIGaMVsL2g	WBSCR22, MERM1, MGC19709, MGC2022, MGC5140, PP3381, WBMT	Williams Beuren syndrome chromosome region 22 [Source:HGNC Symbol;Acc:HGNC:16405]	protein_coding	9606	7:73683025-73705161	142
UG_GRCh38-IKz_ckw_GOUVJka9pVLCA	SNRPB2, Msl1	small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:HGNC:11155]	protein_coding	9606	20:16729961-16742563	144
UG_GRCh38-IlwvuJHY8EP_8cOb4kxKA	PARN, DAN	poly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]	protein_coding	9606	16:14435701-14632728	144
UG_GRCh38-iMezJpcE-UOnB6oa0mUEA	RNA5SP506, RN5S506	RNA, 5S ribosomal pseudogene 506 [Source:HGNC Symbol;Acc:HGNC:43406]	rRNA	9606	X:69672479-69672597	24
UG_GRCh38-iMmzhIZMuDIj30dvN46aA	MC2R, ACTHR	melanocortin 2 receptor (adrenocorticotropic hormone) [Source:HGNC Symbol;Acc:HGNC:6930]	protein_coding	9606	18:13882044-13915707	18
UG_GRCh38-inBfBKoMQy-bcPN4nHj6w	ZNF76, D6S229E, Zfp523, ZNF523	zinc finger protein 76 [Source:HGNC Symbol;Acc:HGNC:13149]	protein_coding	9606	6:35258909-35295985	143
UG_GRCh38-iNfWhuuWP6ui6GBGvYjMg	UGT1A9, HLUGP4, LUGP4, UGT1AI	UDP glucuronosyltransferase 1 family, polypeptide A9 [Source:HGNC Symbol;Acc:HGNC:12541]	protein_coding	9606	2:233671853-233773300	53
UG_GRCh38-iO895Y6MyRcdboGpGNoRQ	AC090505.5	None	processed_pseudogene	9606	3:194755589-194757422	27
UG_GRCh38-iOn2OBF-WWgVWFFZquK2Q	EME1, FLJ31364, MMS4L, SLX2A	essential meiotic structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:24965]	protein_coding	9606	17:50373220-50381483	127
UG_GRCh38-iOXYmjEi9_nRBkOHrWK5Q	CTD-2218K11.3	None	processed_pseudogene	9606	5:82824884-82825184	3
UG_GRCh38-isGsXuGM5HPf01FX0YGmw	AL391730.2	None	miRNA	9606	1:40984853-40984919	0
UG_GRCh38-iT5zBF5u_mXQAkbF-cEtQ	AC007099.2	None	antisense	9606	2:75474453-75482579	5
UG_GRCh38-iTmSI8aht8xExnoTRsXTg	BRK1, C3orf10, HSPC300, MDS027	BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:HGNC Symbol;Acc:HGNC:23057]	protein_coding	9606	3:10115592-10127190	143
UG_GRCh38-IuI6gQdzjpkMxQXCEeftg	TSR1, FLJ10534	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25542]	protein_coding	9606	17:2322503-2337507	142
UG_GRCh38-IW6pUuqIcK48akR3XdOfA	FLJ46066	uncharacterized LOC401103 [Source:EntrezGene;Acc:401103]	lincRNA	9606	3:182446970-182486364	14

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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