RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-6yrQN9kEIKOn-hIal2lVQ	TRBV25-1, TCRBV11S1A1T, TCRBV25S1, TRBV251	T cell receptor beta variable 25-1 [Source:HGNC Symbol;Acc:HGNC:12205]	TR_V_gene	9606	7:142670740-142671244	23
UG_GRCh38-6zawOGd--iI5QIadjS2uQ	DNMT1, CXXC9, DNMT, MCMT	DNA (cytosine-5-)-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2976]	protein_coding	9606	19:10133345-10231286	144
UG_GRCh38-73I_t3XYdHIJmbxeYO0Qw	RNA5SP19, RN5S19	RNA, 5S ribosomal pseudogene 19 [Source:HGNC Symbol;Acc:HGNC:42587]	rRNA	9606	1:228555793-228555901	11
UG_GRCh38-76OpZqUgqqON6fXiKnTNQ	RP11-807H22.5	None	transcribed_unprocessed_pseudogene	9606	11:72158822-72159861	27
UG_GRCh38-7B5dzXWseYliMaltfI3Kw	AC002116.7	None	antisense	9606	19:36014508-36045972	111
UG_GRCh38-7bfhjaMpktdGrdIJoxp6A	RPL31P9	ribosomal protein L31 pseudogene 9 [Source:HGNC Symbol;Acc:HGNC:31893]	processed_pseudogene	9606	18:67137611-67137751	3
UG_GRCh38-7C4WOQ06lsELEZLNTfT2A	FLG-AS1, RP1-91G5.3	FLG antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27913]	antisense	9606	1:152168125-152445456	120
UG_GRCh38-7cfV8tfdMidUntlv7zRhA	EHF, ESE3, ESEJ	ets homologous factor [Source:HGNC Symbol;Acc:HGNC:3246]	protein_coding	9606	11:34621093-34661057	100
UG_GRCh38-7DoFNRNCcmuI0MSZjd4BQ	AL591856.6	None	miRNA	9606	GL000224.1:166714-166794	1
UG_GRCh38-7IsbN0mT2NgBr6OtkN7FQ	RP3-477O4.5	None	transcribed_unprocessed_pseudogene	9606	20:35520852-35528255	34
UG_GRCh38-7Mkwta-SxRRxDc4QqRKZQ	AC079988.3, AC079988.2	None	lincRNA	9606	2:121178327-121182580	13
UG_GRCh38-7pDL3S729Ose6FjhI0dgg	RN7SL478P	RNA, 7SL, cytoplasmic 478, pseudogene [Source:HGNC Symbol;Acc:HGNC:46494]	misc_RNA	9606	7:97998325-97998622	8
UG_GRCh38-7pDWTogy8el7CT2o6R5wA	RP5-837J1.6	None	antisense	9606	17:35018660-35018991	95
UG_GRCh38-7q455mMThMNUc3cLEAEJQ	AC104781.1	None	antisense	9606	2:54747103-54748404	26
UG_GRCh38-7QLYIV11flvqY55ak4izA	DPPA5P1	developmental pluripotency associated 5 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:43752]	processed_pseudogene	9606	19:52425863-52426202	12
UG_GRCh38-7tGdWawvDZwJkcOAuC5zQ	AC017020.2	None	miRNA	9606	Y:15935949-15936020	0
UG_GRCh38-7VsYMgzND5JhOV_UUIF0A	MIR5691, hsa-mir-5691	microRNA 5691 [Source:HGNC Symbol;Acc:HGNC:43545]	miRNA	9606	11:9090312-9090379	2
UG_GRCh38-7VwE_XeNZ1H-QTZ61SwTg	RP1-96H9.5	None	processed_pseudogene	9606	12:6270168-6270425	63
UG_GRCh38-7_vA31OUJrm1W8Y3R3wUA	RP4-784A16.4	None	antisense	9606	1:53304536-53307462	48
UG_GRCh38-8822fvxf02MFBE-q0jTZA	DEFB121, DEFB-21, dJ1093G12.1	defensin, beta 121 [Source:HGNC Symbol;Acc:HGNC:18101]	protein_coding	9606	20:31404845-31412838	5
UG_GRCh38-8AcvfeRYA0H7_CO3kQ_HQ	HS6ST2-AS1, dJ435D1.3	HS6ST2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40870]	antisense	9606	X:132667642-132669888	28
UG_GRCh38-8bDAEeOK5JqFtFKFICGkw	RP5-1057B20.3	None	lincRNA	9606	20:38103524-38104961	60
UG_GRCh38-8ci8Kz1DnUcAMex2oeSgA	GRIK5, GluK5, GRIK2, KA2	glutamate receptor, ionotropic, kainate 5 [Source:HGNC Symbol;Acc:HGNC:4583]	protein_coding	9606	19:41998321-42069498	142
UG_GRCh38-8FdYvDXllh3fACBvipU3w	UBE2Q2, DKFZp762C143	ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:HGNC:19248]	protein_coding	9606	15:75843285-75901078	144
UG_GRCh38-8FThlAnvN1onWTox8UCRA	MIR514A3, hsa-mir-514-3, MIR514-3, MIRN514-3	microRNA 514a-3 [Source:HGNC Symbol;Acc:HGNC:32150]	miRNA	9606	X:147284641-147284728	0

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Loading