RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-Cx2jXcKjXUC9NavuaAv9A	DNM1P50	dynamin 1 pseudogene 50 [Source:HGNC Symbol;Acc:HGNC:48499]	unprocessed_pseudogene	9606	15:30567822-30571089	3
UG_GRCh38-CxmMZPwC-0ptSZTjaYkCg	RP11-1085N6.2	None	antisense	9606	14:56633244-56648658	70
UG_GRCh38-cYkM4f-hijpC8rJ23JIhw	RP5-1006K12.1	None	lincRNA	9606	7:120168345-120186064	5
UG_GRCh38-czjXDrlxjxnRYGAuCpnSA	AC022483.1	None	miRNA	9606	4:56794354-56794438	0
UG_GRCh38-cZlYKbmHL-nS0AxmOwwwQ	GAS2	growth arrest-specific 2 [Source:HGNC Symbol;Acc:HGNC:4167]	protein_coding	9606	11:22625642-22813055	140
UG_GRCh38-CZnoGoCriw8WG5WvEzDsw	COL28A1	collagen, type XXVIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22442]	protein_coding	9606	7:7356203-7535853	125
UG_GRCh38-D-gQiu4infxerwpRVhxbw	HSPD1P7, HSPD1-22P, HSPDP7	heat shock 60kDa protein 1 (chaperonin) pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:5268]	processed_pseudogene	9606	21:28887280-28889272	59
UG_GRCh38-D0XpVekQFAoogUsXmgL-w	SMPD4P2, bA408E5.2	sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39674]	unprocessed_pseudogene	9606	13:19152567-19171194	13
UG_GRCh38-d40nKrVcAbH0CXMYBl-IQ	RP11-48B3.4	None	lincRNA	9606	8:80541300-80543104	133
UG_GRCh38-D7IsSdWdOmiIC1FTO9d8A	ZC3H10, FLJ14451, ZC3HDC10	zinc finger CCCH-type containing 10 [Source:HGNC Symbol;Acc:HGNC:25893]	protein_coding	9606	12:56118159-56127514	139
UG_GRCh38-D7PI1WfsbnpfnxbbpS1pg	ZBTB8A, BOZF1, FLJ90065, ZBTB8, ZNF916A	zinc finger and BTB domain containing 8A [Source:HGNC Symbol;Acc:HGNC:24172]	protein_coding	9606	1:32539427-32605939	143
UG_GRCh38-d8MKm3-vscYZd3lCbsRqg	RP11-272G22.2, bA272G22.2	None	processed_pseudogene	9606	X:53768986-53769219	10
UG_GRCh38-D8v1gFj7nNhwNbirHVUSw	MUC2	mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]	processed_transcript	9606	11:1074875-1110511	76
UG_GRCh38-D9_doGnq0zM8JrrJpdq8Q	E2F4P1	E2F transcription factor 4, p107/p130-binding pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:38684]	processed_pseudogene	9606	6:39553811-39554943	11
UG_GRCh38-daGrpVnIj3eHFdplMw3fg	CTA-246H3.8	None	unprocessed_pseudogene	9606	22:25327252-25339975	78
UG_GRCh38-DArxh8g8UbNGssC2zsKww	AC009413.2	None	processed_pseudogene	9606	2:41850203-41850601	71
UG_GRCh38-dBMkugU_NKLOu0SNtbqLQ	RP11-589C21.5	None	antisense	9606	8:42151772-42152763	30
UG_GRCh38-DE_AocR_W-7DcBaDw6DDQ	RNU11-2P	RNA, U11 small nuclear 2, pseudogene [Source:HGNC Symbol;Acc:HGNC:46942]	snRNA	9606	17:12036496-12036637	40
UG_GRCh38-dgl2ohb7W6gLXqUOUgcJA	LL22NC03-N14H11.1	None	sense_intronic	9606	22:15823197-15823890	78
UG_GRCh38-djAvwDD_GaqSjaVdbbxBg	RN7SKP255	RNA, 7SK small nuclear pseudogene 255 [Source:HGNC Symbol;Acc:HGNC:45979]	misc_RNA	9606	14:89712511-89712823	45
UG_GRCh38-DjXbwMckjrdRSyc5Um48g	RP11-613M10.8	None	protein_coding	9606	9:37512547-37592469	0
UG_GRCh38-DKofSZX__Dc6_rKRVEJ1Q	ANKS6, ANKRD14, FLJ36928, NPHP16, SAMD6	ankyrin repeat and sterile alpha motif domain containing 6 [Source:HGNC Symbol;Acc:HGNC:26724]	protein_coding	9606	9:98731329-98796965	142
UG_GRCh38-DmWGbwBoM7W-fboeA93Pw	CD274, B7-H, B7-H1, B7H1, bA574F11.1, PD-L1, PDCD1LG1, PDL1	CD274 molecule [Source:HGNC Symbol;Acc:HGNC:17635]	protein_coding	9606	9:5450503-5470566	134
UG_GRCh38-DNCuWSzworw9hjbIqlXMw	ROCK1, p160ROCK	Rho-associated, coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]	protein_coding	9606	18:20946906-21111851	144
UG_GRCh38-DnEj2J5Pd2nbgRL_HFS0Q	RP11-497H16.9	None	lincRNA	9606	5:70449636-70450353	66

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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