RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-Hev1b8gG9qPgiwERD4HBw	SLC5A5, NIS	solute carrier family 5 (sodium/iodide cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:11040]	protein_coding	9606	19:17871973-17895174	81
UG_GRCh38-hgdbYing_E60pF1X-xHcw	OXCT1-AS1	OXCT1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40423]	processed_transcript	9606	5:41870030-41872241	115
UG_GRCh38-hgertQ_ySAzedOeC8SJ8A	POLR3GP2	polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:50691]	processed_pseudogene	9606	18:48478561-48479228	13
UG_GRCh38-hhHDXVE_FsPj6b2A73rRw	EXT1, LGCR, LGS, ttv	exostosin glycosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:3512]	protein_coding	9606	8:117794490-118111853	141
UG_GRCh38-HkMYSaaeMpmVOBZDupS3w	RNU6-115P	RNA, U6 small nuclear 115, pseudogene [Source:HGNC Symbol;Acc:HGNC:47078]	snRNA	9606	20:15022852-15022958	9
UG_GRCh38-HornoLIHdMjlmJU23RszQ	RPL23P4	ribosomal protein L23 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:36678]	processed_pseudogene	9606	2:219697799-219698214	12
UG_GRCh38-Hq2gAKByijRS_io7CAgNQ	RP11-91I20.2	None	lincRNA	9606	8:60652502-60653561	50
UG_GRCh38-Hq9lNJkRDYZi-K27gbIAA	MIR4306, hsa-mir-4306	microRNA 4306 [Source:HGNC Symbol;Acc:HGNC:38350]	miRNA	9606	13:99643059-99643149	24
UG_GRCh38-HRnEz-cgvZFDI-HRUCwKQ	RP11-810K23.6	None	processed_pseudogene	9606	15:21053004-21054702	6
UG_GRCh38-hrVbpnaoXGsW4z-b_pQYQ	RP11-25O10.2	None	lincRNA	9606	1:52554818-52555273	55
UG_GRCh38-hugNB23716i4rmgRR9m9g	RNU6-573P	RNA, U6 small nuclear 573, pseudogene [Source:HGNC Symbol;Acc:HGNC:47536]	snRNA	9606	4:35495898-35496003	1
UG_GRCh38-huSsB2TlcQLDLboN7Ed4w	RP11-360K13.1	None	lincRNA	9606	11:96590317-96713822	14
UG_GRCh38-hUzNOqjeaJwdTIlmNZO3w	RP4-568F9.6	None	lincRNA	9606	20:18322552-18359300	75
UG_GRCh38-hVaWoyJZ6SMlW1CIh29ug	RP13-672B3.5	None	processed_pseudogene	9606	12:132745156-132745729	54
UG_GRCh38-hvvcggR9toMNeC3G_45Tg	RNU6-899P	RNA, U6 small nuclear 899, pseudogene [Source:HGNC Symbol;Acc:HGNC:47862]	snRNA	9606	11:58026706-58026812	5
UG_GRCh38-hVxKTr897YYCjx4tkVaEQ	AHSG, A2HS, FETUA, HSGA	alpha-2-HS-glycoprotein [Source:HGNC Symbol;Acc:HGNC:349]	protein_coding	9606	3:186612923-186621318	89
UG_GRCh38-hXvHj18tPqVY5H528Q3VA	RRM2	ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:HGNC:10452]	protein_coding	9606	2:10122328-10131419	142
UG_GRCh38-HYKaRvGSE7cbl2Hr81R6g	LHFPL3-AS2	LHFPL3 antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:44106]	processed_transcript	9606	7:104894628-104926645	114
UG_GRCh38-HzrB7Kt1IauPg6h1-4Fow	RP11-360K13.2	None	processed_pseudogene	9606	11:96642671-96643225	10
UG_GRCh38-h_S3iii4B4_daT_dIiX3w	NHS	Nance-Horan syndrome (congenital cataracts and dental anomalies) [Source:HGNC Symbol;Acc:HGNC:7820]	protein_coding	9606	X:17375420-17735994	142
UG_GRCh38-I1uHg_LbpS8eFUiq4zk5Q	ZBTB37, MGC2629, RP5-1198E17.3, ZNF908	zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]	protein_coding	9606	1:173868082-173903549	142
UG_GRCh38-i3-9CKEfwQ5SHkcGJxn1w	OR4K2	olfactory receptor, family 4, subfamily K, member 2 [Source:HGNC Symbol;Acc:HGNC:14728]	protein_coding	9606	14:19876232-19877309	12
UG_GRCh38-i3GuAcx0AhakWjC6l1N-Q	MIR3929, hsa-mir-3929	microRNA 3929 [Source:HGNC Symbol;Acc:HGNC:38945]	miRNA	9606	18:35934088-35934142	12
UG_GRCh38-i57KIbrzU43QMqzxGNXgw	PCGF2, MEL-18, RNF110, ZNF144	polycomb group ring finger 2 [Source:HGNC Symbol;Acc:HGNC:12929]	protein_coding	9606	17:38733897-38749817	144
UG_GRCh38-I5go_MMdEXTViLA8ESXjA	STX10, hsyn10, SYN10	syntaxin 10 [Source:HGNC Symbol;Acc:HGNC:11428]	protein_coding	9606	19:13144058-13150383	144

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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