RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-4-zR7MO8WGfLk6j01Q7rQ	VWA8, KIAA0564	von Willebrand factor A domain containing 8 [Source:HGNC Symbol;Acc:HGNC:29071]	protein_coding	9606	13:41566837-41961120	144
UG_GRCh38-49gvNyd3dfbzHw5r2giLQ	RP1-12G14.5, dJ12G14.5	None	lincRNA	9606	6:149561152-149563949	3
UG_GRCh38-4AAYooQAZ_dooApTXjZUQ	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	7:10901978-10902074	2
UG_GRCh38-4aMAwmFNCWR8O_1uMousg	RP11-700J17.1	None	antisense	9606	4:44693946-44694386	118
UG_GRCh38-4btj-6XEkgggSJjI9C_UA	RP11-542G1.3	None	lincRNA	9606	4:75354076-75362566	6
UG_GRCh38-4Cc_96d8tY3F6gz_S5Jmw	CTB-191D16.1	None	processed_transcript	9606	4:148940941-148942378	14
UG_GRCh38-4cdFIy5FU_i8dK4SofHUA	FAM188B, C7orf67, FLJ22374	family with sequence similarity 188, member B [Source:HGNC Symbol;Acc:HGNC:21916]	protein_coding	9606	7:30771417-30892387	138
UG_GRCh38-4D86cNE4Tj8HggoJ2fkjA	CHRNA9, NACHRA9	cholinergic receptor, nicotinic, alpha 9 (neuronal) [Source:HGNC Symbol;Acc:HGNC:14079]	protein_coding	9606	4:40335329-40355217	70
UG_GRCh38-4eYUX4omuxa-0wHrS7iCQ	VPS41, HVSP41	vacuolar protein sorting 41 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12713]	protein_coding	9606	7:38722963-38932394	142
UG_GRCh38-4GR76Hyfa7AjArzdiPxZA	MUC15	mucin 15, cell surface associated [Source:HGNC Symbol;Acc:HGNC:14956]	protein_coding	9606	11:26559033-26572233	72
UG_GRCh38-4JmBbF2msx7bULTIGsiLg	SNORD42B, RNU42B, U42B	small nucleolar RNA, C/D box 42B [Source:HGNC Symbol;Acc:HGNC:10181]	snoRNA	9606	17:28720550-28720616	35
UG_GRCh38-4KS6AI085q9cmMgh41uKg	AC123900.2	None	processed_pseudogene	9606	3:33190233-33190328	7
UG_GRCh38-4mwRzXglUDpwepgOBvIlg	RP11-64P14.7, bA64P14.7	None	antisense	9606	9:122609915-122639685	20
UG_GRCh38-4ONHoWUlMtZbZBujcekjA	ETHE1, HSCO, YF13H12	ethylmalonic encephalopathy 1 [Source:HGNC Symbol;Acc:HGNC:23287]	protein_coding	9606	19:43506719-43527244	142
UG_GRCh38-4Ut_A36J_fDOroRjGWI0A	RP11-215I16.1	None	unprocessed_pseudogene	9606	5:8157541-8157788	0
UG_GRCh38-4WFrLwdI8kmszclVDqtkg	RP11-560G2.2	None	processed_pseudogene	9606	12:75305452-75306357	16
UG_GRCh38-4z5uCfvoFbgz7OfR9IdhQ	CDC20B, FLJ37927	cell division cycle 20B [Source:HGNC Symbol;Acc:HGNC:24222]	protein_coding	9606	5:55112995-55173175	99
UG_GRCh38-4zRAkN65enIHKOVKmaNuQ	DEFB1, BD1, DEFA6, DEFB-1, DEFB101, HBD-1, HBD1, MGC51822	defensin, beta 1 [Source:HGNC Symbol;Acc:HGNC:2766]	protein_coding	9606	8:6870575-6878022	107
UG_GRCh38-54u2GrykdJqaU87qdBkVg	TMEM79, FLJ16057, FLJ32254, MATT, MGC13102, RP11-443G18.1	transmembrane protein 79 [Source:HGNC Symbol;Acc:HGNC:28196]	protein_coding	9606	1:156282935-156293185	143
UG_GRCh38-55Mn5YRGVk0Bxn0ON7T5Q	LINC00900	long intergenic non-protein coding RNA 900 [Source:HGNC Symbol;Acc:HGNC:27444]	lincRNA	9606	11:115754248-115760627	70
UG_GRCh38-58oWxKvaE9NF6vHLTIRWA	RP11-407N8.4	None	processed_pseudogene	9606	12:50949117-50949384	47
UG_GRCh38-5A3hpBChspOlzvI8N6wvQ	SBF2-AS1	SBF2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27438]	antisense	9606	11:9758292-9811319	144
UG_GRCh38-5DjZSG4zm-N7kZvRpGI2A	COX19, MGC104475	COX19 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:28074]	protein_coding	9606	7:898778-975599	139
UG_GRCh38-5dqG2wRfkMSCbM16cCZog	TCTE3, TCTEX1D3	t-complex-associated-testis-expressed 3 [Source:HGNC Symbol;Acc:HGNC:11695]	protein_coding	9606	6:169740114-169751587	141
UG_GRCh38-5FCez_XBxP7oopLwcKFAw	HSPE1P13	heat shock 10kDa protein 1 pseudogene 13 [Source:HGNC Symbol;Acc:HGNC:49332]	processed_pseudogene	9606	2:39098149-39098445	58

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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