RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-5Frq-JZa3AKh9YJ6nRjgw	MAPK8, JNK, JNK1, PRKM8, SAPK1	mitogen-activated protein kinase 8 [Source:HGNC Symbol;Acc:HGNC:6881]	protein_coding	9606	10:48306639-48439360	144
UG_GRCh38-5hty5SMYiWrqAyeMjbuQA	MTND4LP25	MT-ND4L pseudogene 25 [Source:HGNC Symbol;Acc:HGNC:42259]	processed_pseudogene	9606	16:49066567-49066729	0
UG_GRCh38-5HYx8Ixgb9Ss9oqCGB3Ww	RP11-755F10.1	None	antisense	9606	11:66244840-66246239	139
UG_GRCh38-5jADarta1OrQkZSWrAmSA	RP5-1112D6.8	None	antisense	9606	6:111309203-111313517	137
UG_GRCh38-5mlfi0rdhFRFbQKXOUUGQ	ACTBL2, DKFZp686D0972	actin, beta-like 2 [Source:HGNC Symbol;Acc:HGNC:17780]	protein_coding	9606	5:57480016-57482809	87
UG_GRCh38-5nPug4RUD6f_iVoLhwnmw	MTRNR2L5	MT-RNR2-like 5 [Source:HGNC Symbol;Acc:HGNC:37162]	protein_coding	9606	10:55599303-55600041	23
UG_GRCh38-5Ocg9IUSBE2fdogyFzQog	RP11-349H17.2	None	sense_intronic	9606	18:26565723-26575626	71
UG_GRCh38-5pDLcZC6Nmkl2ckb6nMQg	SNORA31	Small nucleolar RNA SNORA31 [Source:RFAM;Acc:RF00322]	snoRNA	9606	14:35756327-35756463	17
UG_GRCh38-5PKP1ZoF5BmUSKdF-Q9wA	SFRP1, FRP, FRP-1, SARP2	secreted frizzled-related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]	protein_coding	9606	8:41261958-41309497	137
UG_GRCh38-5Pok5Kezl0qh19ENvbH8g	IGHVII-26-2, IGHV(II)-26-2	immunoglobulin heavy variable (II)-26-2 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5674]	IG_V_pseudogene	9606	14:106314651-106314975	4
UG_GRCh38-5PWtv0S5C8q6MWZlOFVkQ	ATP5F1P3	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:39744]	processed_pseudogene	9606	7:152749079-152749735	69
UG_GRCh38-5te1X4rNXMilH32iXc3QA	CCR10, GPR2	chemokine (C-C motif) receptor 10 [Source:HGNC Symbol;Acc:HGNC:4474]	protein_coding	9606	17:42678889-42683917	133
UG_GRCh38-5xqDVboLkFxDZ5mq5BrUg	HSD3B7, C(27)-3BETA-HSD, SDR11E3	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 [Source:HGNC Symbol;Acc:HGNC:18324]	protein_coding	9606	16:30985207-30989152	138
UG_GRCh38-5YYcBQ5ZKkZeQgfLrxB3Q	MYBPHL, RP11-297O4.3	myosin binding protein H-like [Source:HGNC Symbol;Acc:HGNC:30434]	protein_coding	9606	1:109292365-109307041	105
UG_GRCh38-62sQxeXS0Xia6goCtP6qw	PRDM2, HUMHOXY1, KMT8, MTB-ZF, RIZ, RIZ1, RIZ2	PR domain containing 2, with ZNF domain [Source:HGNC Symbol;Acc:HGNC:9347]	protein_coding	9606	1:13700198-13825079	143
UG_GRCh38-64KNeSVbPyoT6iAP-bMAg	RP11-591L14.2	None	processed_pseudogene	9606	15:79743311-79743468	11
UG_GRCh38-6fpuoX5HF48IbuAry0wIw	OR6K6	olfactory receptor, family 6, subfamily K, member 6 [Source:HGNC Symbol;Acc:HGNC:15033]	protein_coding	9606	1:158754720-158755891	5
UG_GRCh38-6i5iMehjskVgVJdnyl6Mg	IGHV7-34-1	immunoglobulin heavy variable 7-34-1 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:5664]	IG_V_pseudogene	9606	14:106377300-106377733	5
UG_GRCh38-6m5f7XpyahHX0Ay70_PLg	OR10Q2P	olfactory receptor, family 10, subfamily Q, member 2 pseudogene [Source:HGNC Symbol;Acc:HGNC:15135]	unprocessed_pseudogene	9606	11:58291826-58292765	2
UG_GRCh38-6MCxZbTltJhxI3NWsrk9A	NUDT19P4	nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:43588]	processed_pseudogene	9606	6:44898711-44899295	20
UG_GRCh38-6MROj3gzTDaW9-m_v7cxA	SNORD95	Small nucleolar RNA SNORD95 [Source:RFAM;Acc:RF00189]	snoRNA	9606	9:81888918-81888985	0
UG_GRCh38-6NDISIxYaRsK6JdqloWPg	MIR18A, hsa-mir-18, hsa-mir-18a, MIRN18, MIRN18A	microRNA 18a [Source:HGNC Symbol;Acc:HGNC:31548]	miRNA	9606	13:91350743-91350834	0
UG_GRCh38-6r6dwfBW2SsVuormeIevQ	RP11-439A17.4	None	lincRNA	9606	1:121118126-121146826	21
UG_GRCh38-6T_-mOhsVSsV9_kOWQjkw	RP11-351A20.2	None	lincRNA	9606	16:65601101-65601698	4
UG_GRCh38-6XKbKR0lMD7wzof7UEc1w	ACTG1, ACTG, DFNA20, DFNA26	actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]	protein_coding	9606	17:81509971-81523847	144

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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