RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-0pVz06Ga-TDX1tIevyu_g	AC090950.1	None	miRNA	9606	3:15738657-15738718	0
UG_GRCh38-0RUk816A5mITs3MpuqwZg	PRKRIRP7	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:39574]	processed_pseudogene	9606	8:78760142-78762431	102
UG_GRCh38-0t6ChYl-yQvgkUnhANMKA	SURF6P1	surfeit 6 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:37722]	processed_pseudogene	9606	Y:17192826-17193652	2
UG_GRCh38-0W2tU-4OfZkaNYmYQk3zQ	AC106883.1	None	processed_pseudogene	9606	2:194454581-194455142	0
UG_GRCh38-0YG96TpzCA0XY9peUHkLg	U3	Small nucleolar RNA U3 [Source:RFAM;Acc:RF00012]	snoRNA	9606	15:36852640-36852859	6
UG_GRCh38-0zc7wr0uClyp0xIIZ22uQ	B3GALT5-AS1, C21orf88	B3GALT5 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:16424]	antisense	9606	21:39597147-39612821	86
UG_GRCh38-1-gIiSfd8qjG4tKmb9RyA	RNU6-587P	RNA, U6 small nuclear 587, pseudogene [Source:HGNC Symbol;Acc:HGNC:47550]	snRNA	9606	X:101691580-101691685	1
UG_GRCh38-13EB4Wk5JBVn2zdPPyP8g	CTD-2223O18.1	None	antisense	9606	14:104137150-104137898	79
UG_GRCh38-13iP8Hnri5hNgydWBwj6Q	RP11-477N3.1	None	lincRNA	9606	2:54082554-54085066	125
UG_GRCh38-17AmDC3lntSvOzT1Maa4g	GABRA3	gamma-aminobutyric acid (GABA) A receptor, alpha 3 [Source:HGNC Symbol;Acc:HGNC:4077]	protein_coding	9606	X:152166234-152451358	53
UG_GRCh38-1BPVl6VJq8uBqE4P7_ZfQ	AC027281.1	None	miRNA	9606	16:70873184-70873313	0
UG_GRCh38-1C78vn7hjuKrxf-AgTOBA	ABHD13, bA153I24.2, BEM46L1, C13orf6, FLJ14906	abhydrolase domain containing 13 [Source:HGNC Symbol;Acc:HGNC:20293]	protein_coding	9606	13:108218379-108234255	141
UG_GRCh38-1InwomnBwID_waEqfp4wQ	TNFRSF10B, CD262, DR5, KILLER, TRAIL-R2, TRICK2A, TRICKB	tumor necrosis factor receptor superfamily, member 10b [Source:HGNC Symbol;Acc:HGNC:11905]	protein_coding	9606	8:23020133-23069179	142
UG_GRCh38-1jKF0m0GdJtOF5cK-yu0Q	H2AFX, H2AX	H2A histone family, member X [Source:HGNC Symbol;Acc:HGNC:4739]	protein_coding	9606	11:119093854-119095467	137
UG_GRCh38-1KzwmS5VM-rc37DdixkMw	RP11-514P8.7	None	protein_coding	9606	7:102541501-102592444	0
UG_GRCh38-1L2OjajRh_nHD2WUKfFNA	HIRA, DGCR1, TUP1, TUPLE1	histone cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:4916]	protein_coding	9606	22:19330698-19447450	142
UG_GRCh38-1m45-j55D3NYQEdm4xJwg	RP11-872J21.3	None	antisense	9606	14:96500810-96502321	138
UG_GRCh38-1Oe-4sclAxz1-XMVsEYqg	MIR6756, hsa-mir-6756	microRNA 6756 [Source:HGNC Symbol;Acc:HGNC:49974]	miRNA	9606	11:119312950-119313012	0
UG_GRCh38-1OjlnOIYr8d2ejELD1p0g	TMEM262	transmembrane protein 262 [Source:HGNC Symbol;Acc:HGNC:49389]	protein_coding	9606	11:65084979-65089375	133
UG_GRCh38-1oNqhoicpmx6PrsJiZxuA	RP11-718I15.1	None	antisense	9606	18:58189834-58195696	35
UG_GRCh38-1TtHZhGFPhisLfj8QOAtw	MIR4640, hsa-mir-4640	microRNA 4640 [Source:HGNC Symbol;Acc:HGNC:41561]	miRNA	9606	6:30890883-30890972	0
UG_GRCh38-1uEZnB1qHnSslw4MGcVtg	RP11-218E20.3	None	lincRNA	9606	14:50956259-50962002	110
UG_GRCh38-1utrZjCFBG0pizBnS9SJA	RP11-1391J7.1	None	antisense	9606	11:856880-859795	133
UG_GRCh38-2-iXL2wj378fqwJuUWUxQ	ST8SIA6-AS1, bA414K1.2	ST8SIA6 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44880]	antisense	9606	10:17386936-17413503	71
UG_GRCh38-27leO4tHl7c0fdUruN7kQ	RP13-20L14.2	None	TEC	9606	17:82362349-82363196	0

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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