RenalDB

Boolean Operators
and \| AND	GO:0001822 AND TAXID:9606	Returns accessions existing between two query sets.
or \| OR	BIOTYPE:lincRNA OR BIOTYPE:antisense	Returns accessions existing in either of two query sets.
not \| NOT and not \| AND NOT	NOT TAXID:9606 EXPRESSED:Kidney AND NOT EXPRESSED:"Kidney Cortex"	Returns accessions not in the query.
()	BIOTYPE:lincRNA AND (ENRICHED:Heart OR ENRICHED:Kidney)	Increases the precedence of a query.
Expression	Example	Description
Important! If there is whitespace in your query. The query must be enclosed by quotes.
No tag	ENST00000358073 NONHSAT008273 PAXIP1-AS1	Returns matched gene/transcript names, UGAs, or external accessions. Note: Ensembl annotations were used for alignment in RenalDB. Therefore, all Ensembl 83 ids should return values. Other accession systems may return values if they map to a UGA that also maps to an Ensembl UGA.
SPECIFIC:(tissue)	SPECIFIC:"Kidney Cortex"	Returns sequences detected in only one type of tissue. See [Help] for a list of possible values.
ENRICHED:(tissue)	ENRICHED:Heart	Returns sequences which have increased expression in the given tissue. See [Help] for a list of possible values.
EXPRESSED:(tissue)	EXPRESSED:Heart	Returns sequences expressed in the given tissue type. See [Help] for a list of possible values.
METADATA:(metadata)	METADATA:"Weeks 3"	Returns sequences from samples with the given metadata. See [Help] for a list of possible values.
POS:(tax_id):(chromosome):(start)-(end)	POS:9606:1:914880-969309	Returns sequences falling withing the given position.
BIOTYPE:(biotype)	BIOTYPE:lincRNA	Returns sequences which contain a transcript annotated as the given biotype. See [Help] for a list of possible values.
SEQTYPE:(gene\|transcript)	SEQTYPE:transcript	Returns the given type of sequence.
TAXID:(7955\|9606\|10090)	TAXID:7955	Returns sequences associated with the given taxonomy. Taxonomy IDs (TAXID) are: 7955 (zebrafish), 9606 (human), and 10090 (mouse).
GO:(GO term accession)	GO:0005515	Returns sequences which contain an annotation of the given Gene Ontology (GO) term.

Accession	Name(s)	Description	Biotype	Tax ID	Position	Detections
UG_GRCh38-b9-kWa1OzHDAO7usJg9Iw	MIR3922, hsa-mir-3922	microRNA 3922 [Source:HGNC Symbol;Acc:HGNC:38895]	miRNA	9606	12:104591633-104591716	3
UG_GRCh38-b90EZMN-GFH6qRQOolYsQ	CTB-95B16.1	None	unprocessed_pseudogene	9606	5:163416525-163416731	17
UG_GRCh38-BACLZD8_ZhveXQ2T-M4mg	ACHE, YT	acetylcholinesterase (Yt blood group) [Source:HGNC Symbol;Acc:HGNC:108]	protein_coding	9606	7:100889994-100896974	137
UG_GRCh38-baDmbRKL4xc3nQ7Wpi5lw	HLA-DMB, D6S221E, RING7	major histocompatibility complex, class II, DM beta [Source:HGNC Symbol;Acc:HGNC:4935]	protein_coding	9606	6:32934629-32941070	141
UG_GRCh38-bBS5Vn-wXuCuQsViC2DPw	AC017028.4	None	miRNA	9606	2:239069752-239069845	12
UG_GRCh38-BbZdK1CLbZuj5YbXIX5xg	RP11-136L23.2	None	antisense	9606	12:118066398-118066725	6
UG_GRCh38-bCOycvVvMN2S1Rn5gQi2Q	SNORD13P1, RNU13P1, U13, U13.32A	small nucleolar RNA, C/D box 13 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:10110]	snoRNA	9606	22:42076058-42076161	23
UG_GRCh38-bDZuVQXLKqnuiErbPr_Sw	Y_RNA	Y RNA [Source:RFAM;Acc:RF00019]	misc_RNA	9606	15:52162751-52162852	28
UG_GRCh38-bEhtNZH5V5zEcgQlHving	SOS2	son of sevenless homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11188]	protein_coding	9606	14:50117120-50231558	144
UG_GRCh38-BFvHWfYPqcnTVF3oKnRfA	RP11-114H20.1, bA114H20.1	None	lincRNA	9606	X:52050860-52054255	0
UG_GRCh38-bicvSPM6yesVzpaQ-JDmQ	PABPC1L2B-AS1, bA493K23.1	PABPC1L2B antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50345]	antisense	9606	X:72998388-73002856	1
UG_GRCh38-Bj2DApb2srCrM8bemL0UQ	COL6A6	collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:HGNC:27023]	protein_coding	9606	3:130560334-130678155	119
UG_GRCh38-bjSr4oaKbvwGNbHcbdAuQ	RP11-977G19.5	None	sense_overlapping	9606	12:56162359-56190284	139
UG_GRCh38-bkVTdFEpJ4b-3RTybtZpA	RP1-232L22__A.1, dJ232L22A.1	None	processed_pseudogene	9606	X:101720340-101721709	4
UG_GRCh38-bL9VkjBcjbZ4UIRTIYSNQ	AC068535.1	None	miRNA	9606	2:104488257-104488351	3
UG_GRCh38-bNKJmFcTYT-t83GzZvYcQ	RP11-314C9.1	None	TEC	9606	2:38121935-38123881	50
UG_GRCh38-bo1MztQsfFFoZec5F0GWg	RP11-361F15.5	None	processed_pseudogene	9606	6:147406531-147406824	15
UG_GRCh38-boq4nuxdyEJt65fB0-f_A	AC116614.1	None	antisense	9606	2:949627-950274	98
UG_GRCh38-BoWK4B2RSmaaPeyWb-ccg	HIST1H4I, H4/m, H4FM	histone cluster 1, H4i [Source:HGNC Symbol;Acc:HGNC:4793]	protein_coding	9606	6:27138588-27139881	131
UG_GRCh38-bRLB0r-BdQiZNqZCc-mxw	PAX5, BSAP	paired box 5 [Source:HGNC Symbol;Acc:HGNC:8619]	protein_coding	9606	9:36833275-37034185	111
UG_GRCh38-bryGT75Tfi6tuymiSWCwg	GMPSP1	guanine monophosphate synthase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39428]	processed_pseudogene	9606	4:8174421-8174999	96
UG_GRCh38-btfxErZtM-gxX9iXynKBQ	Metazoa_SRP	Metazoan signal recognition particle RNA [Source:RFAM;Acc:RF00017]	misc_RNA	9606	22:49846456-49846720	13
UG_GRCh38-BUC3dJ4h0zwmhDITU8Ycg	RP11-143A12.3	None	lincRNA	9606	5:8839732-8881525	20
UG_GRCh38-BXbIXt4hKXVCzCA-xnkIA	AP000302.58	None	antisense	9606	21:33482499-33484258	86
UG_GRCh38-bXCI2jHR_TpPVBxQoWFbQ	SNORD12C, RNU106, SNORD106, U106	small nucleolar RNA, C/D box 12C [Source:HGNC Symbol;Acc:HGNC:10105]	snoRNA	9606	20:49278940-49279028	89

RenalDB: A Knowledge Database for Kidney RNA Expression

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

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